<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Jean-Francois,<div><br></div><div><br></div><div>Yup, you certainly have a conflict between your two MPI's now… :-)</div><div><br></div><div>What does your mpirun / mpicc lines in /usr/local/lib/mcstas/tools/perl/mcstas_config.perl say?</div><div><br></div><div>(I.e. </div><div><div> MPIRUN => '/usr/local/bin/mpirun',</div><div> MPICC => '/usr/local/bin/mpicc',</div></div><div>)</div><div><br></div><div>Also, check if you perhaps have a .mcstas/mcstas_config.perl in your homedir?</div><div><br></div><div><br></div><div>Best,</div><div><br></div><div>Peter</div><div><br></div><div><br><div><div>On Jun 14, 2012, at 13:49 , <<a href="mailto:Jean-Francois.Moulin@hzg.de">Jean-Francois.Moulin@hzg.de</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div> Hi Emmanuel!<br><br>thanks for the answer. Yes the build works but, this is what I get when I try to use it:<br><br>(case A)<br>~/Lab/MCarlo/McStas$ mcgui refsans_simplified_0.instr <br>./refsans_simplified_0.out: error while loading shared libraries: libmpich.so.3: cannot open shared object file: No such file or directory<br><br>And this is correct, the file is not on my system... why did the configure look for mpich in the first place?<br><br>(caseB)<br>Well it wants MPICH? I tried and installed mpich2 from ubuntu repos (including dev), ./configure make make install...<br>mcgui now starts without problem and shows my instrument parameters (it did not in case A)<br>but the simulation returns errors...<br><br>mcrun: No MPI/grid machine list. Running locally.<br> Define /home/jfmoulin/.mcstas/hosts<br> or /usr/local/lib/mcstas/tools/perl/hosts<br> or use option --machines=<file><br>[jfm-lap:11887] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 357<br>[jfm-lap:11887] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 230<br>[jfm-lap:11887] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../orte/runtime/orte_init.c at line 132<br>--------------------------------------------------------------------------<br>It looks like orte_init failed for some reason; your parallel process is<br>likely to abort. There are many reasons that a parallel process can<br>fail during orte_init; some of which are due to configuration or<br>environment problems. This failure appears to be an internal failure;<br>here's some additional information (which may only be relevant to an<br>Open MPI developer):<br><br> orte_ess_set_name failed<br> --> Returned value A system-required executable either could not be found or was not executable by this user (-127) instead of ORTE_SUCCESS<br><br><br>Is there a reason to have conflicts between the two mpi (I have dependencies of other packages on openmpi) or do I forget a setup step?<br>I had the box running before and did not change my home dir so I guess it should still work<br>Anyway, thanks for your help!<br><br>Ciao<br>JF<br>-<br>Helmholtz Zentrum Geesthacht<br>Institut für Werkstoffforschung<br>Abteilung WPN, Instrument REFSANS<br>Lichtenbergstr. 1<br>85747 Garching FRM II<br>Tel.: +49 (0)89 289 10762<br>Internet: <a href="http://www.frm2.tum.de">http://www.frm2.tum.de</a><br><br>-----Emmanuel FARHI <<a href="mailto:farhi@ill.eu">farhi@ill.eu</a>> schrieb: -----<br>An: <a href="mailto:Jean-Francois.Moulin@hzg.de">Jean-Francois.Moulin@hzg.de</a>, "McStas users list at <a href="http://mcstas.org">mcstas.org</a>" <<a href="mailto:mcstas-users@mcstas.org">mcstas-users@mcstas.org</a>><br>Von: Emmanuel FARHI <<a href="mailto:farhi@ill.eu">farhi@ill.eu</a>><br>Datum: 06/14/2012 10:22AM<br>Betreff: Re: [mcstas-users] openmpi compilation problem<br><br>Hi Jean-Francois,<br><br>to my knowledge, this is just a warning. The tar.gz configure; make; <br>make install should proceed OK still, and McStas should be able to find <br>MPI if 'mpicc' and 'mpirun' commands are available at the prompt.<br><br>OpenMPI seems OK on recent systems. It was less reliable than MPICH <br>until 2010-2011 (would stall for long simulations with e.g. ncount > 2e9).<br><br>Emmanuel.<br><br>On 06/13/2012 05:36 PM, <a href="mailto:Jean-Francois.Moulin@hzg.de">Jean-Francois.Moulin@hzg.de</a> wrote:<br><blockquote type="cite">Hi to all!<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">new Linux distro, new problem! On Linux Mint 13 I do not manage to install due to mpi problems. As already suggested some months ago I installed openmpi (packages from Ubuntu repos: libopenmpi 1.4.3.2 and its dev).<br></blockquote><blockquote type="cite">The ./configure tells me that :<br></blockquote><blockquote type="cite">checking mpi.h presence... no<br></blockquote><blockquote type="cite">checking for mpi.h... no<br></blockquote><blockquote type="cite">WARNING: /usr/bin/mpicc may fail to compile without mpi.h<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">but I find this on my system:<br></blockquote><blockquote type="cite">./usr/lib/openmpi/include/mpi.h<br></blockquote><blockquote type="cite">After reading the output of configure -h, I tried<br></blockquote><blockquote type="cite"> ./configure -I/usr/lib/openmpi/include/:<br></blockquote><blockquote type="cite">configure: error: unrecognized option: `-I'<br></blockquote><blockquote type="cite">I tried putting this path in the cppflags envirt variable. To no avail.<br></blockquote><blockquote type="cite">seems I miss the point.<br></blockquote><blockquote type="cite">Since I get a Makefile I looked for an include section where I could manually put the path but that does not look so easy... (for me)<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">second question I am on a 64 bit machine, I should thus configure --with-pic right?<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Thanks in advance for your help!<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Best<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Jean-Francois<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">-<br></blockquote><blockquote type="cite">Helmholtz Zentrum Geesthacht<br></blockquote><blockquote type="cite">Institut für Werkstoffforschung<br></blockquote><blockquote type="cite">Abteilung WPN, Instrument REFSANS<br></blockquote><blockquote type="cite">Lichtenbergstr. 1<br></blockquote><blockquote type="cite">85747 Garching FRM II<br></blockquote><blockquote type="cite">Tel.: +49 (0)89 289 10762<br></blockquote><blockquote type="cite">Internet: <a href="http://www.frm2.tum.deHelmholtz-Zentrum">http://www.frm2.tum.deHelmholtz-Zentrum</a> Geesthacht<br></blockquote><blockquote type="cite">Zentrum für Material- und Küstenforschung GmbH<br></blockquote><blockquote type="cite">Max-Planck-Straße 1 I 21502 Geesthacht I Deutschland/Germany<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Geschäftsführer/Board of Management: Prof. Dr. Wolfgang Kaysser, Dipl.-Ing. Michael Ganß<br></blockquote><blockquote type="cite">Vorsitzender des Aufsichtsrates/Chairman of the Supervisory Board: MinDirig Wilfried Kraus<br></blockquote><blockquote type="cite">Amtsgericht Lübeck HRB 285 GE (Register Court)<br></blockquote><blockquote type="cite">Internet: <a href="http://www.hzg.de">http://www.hzg.de</a><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">mcstas-users mailing list<br></blockquote><blockquote type="cite"><a href="mailto:mcstas-users@mcstas.org">mcstas-users@mcstas.org</a><br></blockquote><blockquote type="cite"><a href="http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users">http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users</a><br></blockquote><br>-- <br>Emmanuel FARHI,<a href="http://www.ill.eu/computing/people/emmanuel-farhi">www.ill.eu/computing/people/emmanuel-farhi</a> \|/ ____ \|/<br>CS-Group ILL4/221, Institut Laue-Langevin (ILL) Grenoble ~@-/ oO \-@~<br>6 rue J. Horowitz, BP 156, 38042 Grenoble Cedex 9,France /_( \__/ )_\<br>Work :Tel (33/0) 4 76 20 71 35. Fax (33/0) 4 76 48 39 06 \__U_/<br><br>Helmholtz-Zentrum Geesthacht <br>Zentrum für Material- und Küstenforschung GmbH <br>Max-Planck-Straße 1 I 21502 Geesthacht I Deutschland/Germany <br><br>Geschäftsführer/Board of Management: Prof. Dr. Wolfgang Kaysser, Dipl.-Ing. Michael Ganß <br>Vorsitzender des Aufsichtsrates/Chairman of the Supervisory Board: MinDirig Wilfried Kraus <br>Amtsgericht Lübeck HRB 285 GE (Register Court) <br>Internet: <a href="http://www.hzg.de">http://www.hzg.de</a> <br>_______________________________________________<br>mcstas-users mailing list<br><a href="mailto:mcstas-users@mcstas.org">mcstas-users@mcstas.org</a><br>http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users<br></div></blockquote></div><br><div apple-content-edited="true">
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font-size: 11pt; font-family: Calibri, sans-serif; margin-top: 0cm; margin-bottom: 0.0001pt; "><span style="font-size: 8pt; font-family: Arial, sans-serif; color: black; ">Building 307<o:p></o:p></span></div></td></tr><tr><td style="padding-top: 0cm; padding-right: 0cm; padding-bottom: 0cm; padding-left: 0cm; "><div style="margin-right: 0cm; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; margin-top: 0cm; margin-bottom: 0.0001pt; "><span style="font-size: 8pt; font-family: Arial, sans-serif; color: black; ">DK-2800 Kongens Lyngby<o:p></o:p></span></div></td></tr><tr><td style="padding-top: 0cm; padding-right: 0cm; padding-bottom: 0cm; padding-left: 0cm; "><div style="margin-right: 0cm; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; margin-top: 0cm; margin-bottom: 0.0001pt; "><span style="font-size: 8pt; font-family: Arial, sans-serif; color: black; ">Direct +45 2125 4612<o:p></o:p></span></div></td></tr><tr><td style="padding-top: 0cm; padding-right: 0cm; padding-bottom: 0cm; padding-left: 0cm; "><div style="margin-right: 0cm; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; margin-top: 0cm; margin-bottom: 0.0001pt; "><span style="font-size: 8pt; font-family: Arial, sans-serif; color: black; ">Mobil +45 2125 4612<o:p></o:p></span></div><div style="margin-right: 0cm; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; margin-top: 0cm; margin-bottom: 0.0001pt; "><span style="font-size: 8pt; font-family: Arial, sans-serif; color: black; ">Fax +45 4593 2399<o:p></o:p></span></div></td></tr></tbody></table></span></div></td></tr></tbody></table></span><span class="Apple-style-span" style="color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-family: Helvetica; border-collapse: separate; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="font-size: medium; border-collapse: collapse; "><a href="mailto:pkwi@fysik.dtu.dk">pkwi@fysik.dtu.dk</a></span></span></span><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: collapse; font-size: 15px; "><table class="MsoNormalTable" border="0" cellspacing="0" cellpadding="0" width="400" style="font-family: Calibri, sans-serif; width: 300pt; border-collapse: collapse; position: static; z-index: auto; "><tbody><tr><td width="400" colspan="2" valign="top" style="width: 300pt; padding-top: 0cm; padding-right: 0cm; padding-bottom: 0cm; padding-left: 0cm; "><div style="margin-right: 0cm; margin-left: 0cm; margin-top: 0cm; margin-bottom: 0.0001pt; "><font class="Apple-style-span" face="Arial, sans-serif"><span class="Apple-style-span" style="font-size: 11px; "><b><br></b></span></font></div></td></tr></tbody></table></span></span></span></span></span></span></span></span>
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