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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">The broken links pointed at /var/lib/alternatives<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">It seems to be a hangover from making sure that mcstas 2.0 and 2.1 can be installed side by side even though I did an uninstall of the previous version.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Maybe there needs to be some extra checking.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Rob<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Peter Kjær Willendrup [mailto:pkwi@fysik.dtu.dk]
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<b>Sent:</b> 25 November 2014 12:43<br>
<b>To:</b> Dalgliesh, Robert (STFC,RAL,ISIS)<br>
<b>Cc:</b> mcstas-users@mcstas.org<br>
<b>Subject:</b> Re: [mcstas-users] mantid output test<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Good to hear that. :-) <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">In regard to the rpm’s - where did they point? and where would you have liked to have them point? (Then there is a chance things will be OK for 2.2… ;-) )<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Peter<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On 25 Nov 2014, at 13:23 , <a href="mailto:robert.dalgliesh@stfc.ac.uk">
robert.dalgliesh@stfc.ac.uk</a> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks Peter,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">That worked.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Incidentally it still took a bit of hacking to install mcstas 2.1 from rpm.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">The soft links still point at some strange places.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks again</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Rob</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span class="apple-converted-space"><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> </span></span><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Peter
Kjær Willendrup [<a href="mailto:pkwi@fysik.dtu.dk">mailto:pkwi@fysik.dtu.dk</a>]<span class="apple-converted-space"> </span><br>
<b>Sent:</b><span class="apple-converted-space"> </span>25 November 2014 12:12<br>
<b>To:</b><span class="apple-converted-space"> </span>Dalgliesh, Robert (STFC,RAL,ISIS)<br>
<b>Cc:</b><span class="apple-converted-space"> </span><a href="mailto:mcstas-users@mcstas.org">mcstas-users@mcstas.org</a><br>
<b>Subject:</b><span class="apple-converted-space"> </span>Re: [mcstas-users] mantid output test</span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Dear Rob,<span class="apple-converted-space"> </span><o:p></o:p></p>
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<p class="MsoNormal">You have indeed stumbled across a proper bug - it seems what I implemented in mcdisplay for generation of the IDF implicitly assumes n>1 bins… :-) I will test for the special case of n=1 bins in the next released mcdisplay.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">I am able to generate the IDF and NeXus output if I define an event monitor with 2x2 bins which loads OK into Mantid.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">(My Mantid then on the other hand crashes when I attempt to show the instrument… This may or may not be my recently updated Mac OS X Yosemite, not clear…. - But “color fill plot” can be done)<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Best,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Peter<o:p></o:p></p>
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<p class="MsoNormal">On 25 Nov 2014, at 12:13 ,<span class="apple-converted-space"> </span><a href="mailto:robert.dalgliesh@stfc.ac.uk"><span style="color:purple">robert.dalgliesh@stfc.ac.uk</span></a><span class="apple-converted-space"> </span>wrote:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Hi,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">I’ve been brave and tried the Mantid output option in mcstas this morning.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">I’m using mcstas 2.1 and mantid 3.2.1 on a Redhat 6.4 box.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">There seems to be no problem with the installed NeXus and hdf libraries the simulation runs fine.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">The problem comes when I try following the instructions to generate the IDF file.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">This is the simple instrument I’ve tried some of the variables would be picked up in later components.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">/* Change name of instrument and input parameters with default values */</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">DEFINE INSTRUMENT test(s1=0.03,s2=0.02,s3=0.008,bs=0.05,cdel=0.0,sampdet=4.406,lmin=0.5,lmax=13.0,dang=0.0)</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">DECLARE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">%{</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">%}</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">INITIALIZE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">%{</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">%}</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">TRACE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">COMPONENT Origin = Progress_bar()</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> AT (0,0,0) ABSOLUTE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">COMPONENT sourceMantid = ISIS_moderator(</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> Face = "hydrogen", Lmax = lmax, Lmin = lmin, dist = 3.7,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> focus_xw = 0.03, focus_yh = 0.03, xwidth = 0.083, yheight = 0.033,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> CAngle = 0.0, SAC = 1)</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> AT (0.0, 0.0, 0.0) RELATIVE PREVIOUS</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">COMPONENT guide1 = Guide(</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> w1 = 0.03, h1 = 0.03, w2 = 0.03, h2 = 0.03, l = 5.3, m = 3.0)</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> AT (0.0, 0.0, 3.7) RELATIVE Origin</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">COMPONENT disk1 = DiskChopper(</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> theta_0 = 111.0, radius = 0.27, yheight = 0.04, nu = 10.0, nslit = 1,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> jitter = 0.0, delay = 0.015417+0.00012222+cdel*1.0e-6)</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> AT (0.0, 0.0, 9.689) ABSOLUTE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> ROTATED (0.0, 0.0, 90.0) ABSOLUTE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">COMPONENT disk2 = DiskChopper(</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> theta_0 = 111.0, radius = 0.27, yheight = 0.04, nu = -10.0, nslit = 1,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> jitter = 0.0, delay = 0.015417+0.00012222+cdel*1.0e-6)</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> AT (0.0, 0.0, 9.739) ABSOLUTE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> ROTATED (0.0, 0.0, 90.0) ABSOLUTE</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">COMPONENT nD_Mantid_0 = Monitor_nD(</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> options ="mantid square x limits =[-0.0155 0.0155] bins=1 y limits =[-0.0155 0.0155] bins=1, neutron pixel t, list all neutrons",</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> xmin = -0.0155, xmax = 0.0155, ymin = -0.0155, ymax = 0.0155, restore_neutron = 1, filename = "monitor1Events.dat")</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">AT (0, 0, 9.8195) RELATIVE sourceMantid</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">The xml file resulting from this when I run the command</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">mcdisplay --format=Mantid Test_Mantid.instr -n0<span class="apple-converted-space"> </span></span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">after compiling chucks out this message</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Illegal division by zero at /usr/local/bin/mcdisplay line 391, <IN> line 73.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">And proceeds to dump an enormously long xml file with a huge number of weird repeated components.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Any hints as to what is messing things up would be greatly appreciated.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Thanks</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Rob</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">===================================</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Dr. Robert Dalgliesh</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">ISIS</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">STFC Rutherford Appleton Laboratory</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">R3 1.29</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Harwell Oxford</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Didcot</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">OX11 0QX</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Office Tel: +44 (0) 1235 445687 or OffSpec Instrument: +44 (0) 1235 567045</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Internal Mobile Extension: 1176</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">e-mail: <a href="mailto:robert.dalgliesh@stfc.ac.uk"><span style="color:purple">robert.dalgliesh@stfc.ac.uk</span></a></span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif""><br>
<br>
<br>
</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif"">--<span class="apple-converted-space"> </span><br>
Scanned by iCritical.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif""><br>
_______________________________________________<br>
mcstas-users mailing list<br>
</span><a href="mailto:mcstas-users@mcstas.org"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif";color:purple">mcstas-users@mcstas.org</span></a><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif""><br>
</span><a href="http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif";color:purple">http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users</span></a><o:p></o:p></p>
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</div>
</blockquote>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif"">_______________________________________________<br>
mcstas-users mailing list<br>
</span><a href="mailto:mcstas-users@mcstas.org"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif";color:purple">mcstas-users@mcstas.org</span></a><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif""><br>
</span><a href="http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users"><span style="font-size:9.0pt;font-family:"Helvetica","sans-serif";color:purple">http://mailman.mcstas.org/cgi-bin/mailman/listinfo/mcstas-users</span></a><o:p></o:p></p>
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</blockquote>
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<p class="MsoNormal"><o:p> </o:p></p>
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