McStas version 2.7 (Nov. 27, 2020) Copyright (C) DTU Physics and Risoe National Laboratory, 1997-2020 Additions (C) Institut Laue Langevin, 2003-2020 All rights reserved - Component library: McStas-2.7, built Nov. 27, 2020 Instrument opened: PANDA_Michal_DV_draft.instr /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcrun: 14: /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcrun: [[: not found INFO: No output directory specified (--dir) INFO: Using directory: "PANDA_Michal_DV_draft_20201213_183136" INFO: Regenerating c-file: PANDA_Michal_DV_draft.c Info: 'Al_window' is a contributed component. Info: Defining SPLIT from PG002_mono=Monochromator_curved() to END in instrument PANDA Info: Defining SPLIT from PG002_ana=Monochromator_curved() to END in instrument PANDA CFLAGS= INFO: Recompiling: ./PANDA_Michal_DV_draft.out mccode-r.c: In function ‘sighandler’: mccode-r.c:3719:5: warning: implicit declaration of function ‘kill’; did you mean ‘ceill’? [-Wimplicit-function-declaration] /usr/share/mcstas/2.7/tools/Python/mcrun/../mccodelib/../../../samples/Single_crystal.comp: In function ‘off_init’: /usr/share/mcstas/2.7/tools/Python/mcrun/../mccodelib/../../../samples/Single_crystal.comp:963:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] #endif /* !SINGLE_CRYSTAL_DECL */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/share/mcstas/2.7/tools/Python/mcrun/../mccodelib/../../../samples/Single_crystal.comp:1050:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] "WARNING setting order=1\n", NAME_CURRENT_COMP); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/share/mcstas/2.7/tools/Python/mcrun/../mccodelib/../../../samples/Single_crystal.comp:1066:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] struct hkl_data *L; /* Structure factor list */ ^~~~~~~~~~~~~~~~~~~~~~ mccode-r.c: In function ‘mcdetector_import’: mccode-r.c:768:51: warning: ‘ ’ directive output may be truncated writing 1 byte into a region of size between 0 and 1023 [-Wformat-truncation=] In file included from /usr/include/stdio.h:862:0, from mccode-r.h:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output 9 or more bytes (assuming 1032) into a destination of size 1024 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ INFO: === begin instrument: PANDA Creator: McStas 2.7 - Nov. 27, 2020 Source: PANDA_Michal_DV_draft.instr Parameters: prim_shut_pos(int) sapphire(int) ca1(int) ca2(int) ca3(int) ca4(int) ms1(double) lms(double) lsa(double) lad(double) ki(double) kf(double) dE(double) Q(double) mth(double) mtt(double) mtx(double) mty(double) mgy(double) mfh(double) mfv(double) scatsense(int) sth(double) stt(double) stx(double) sty(double) stz(double) sgx(double) sgy(double) ss1_width(double) ss1_height(double) ss2_width(double) ss2_height(double) ath(double) att(double) atx(double) aty(double) agy(double) afh(double) afv(double) Trace_enabled: yes Default_main: yes Embedded_runtime: yes end instrument begin simulation: . Format: McStas URL: http://www.mccode.org Creator: McStas 2.7 - Nov. 27, 2020 Instrument: PANDA_Michal_DV_draft.instr Ncount: 1000000 Trace: no Gravitation: no Seed: 1607880818 Directory: . Param: prim_shut_pos=1 Param: sapphire=1 Param: ca1=80 Param: ca2=80 Param: ca3=80 Param: ca4=80 Param: ms1=0.04 Param: lms=2.15 Param: lsa=1.05 Param: lad=0.95 Param: ki=0 Param: kf=0 Param: dE=0 Param: Q=0 Param: mth=0 Param: mtt=0 Param: mtx=0 Param: mty=0 Param: mgy=0 Param: mfh=4.5 Param: mfv=2 Param: scatsense=-1 Param: sth=0 Param: stt=0 Param: stx=0 Param: sty=0 Param: stz=0 Param: sgx=0 Param: sgy=0 Param: ss1_width=0.02 Param: ss1_height=0.03 Param: ss2_width=0.02 Param: ss2_height=0.04 Param: ath=0 Param: att=0 Param: atx=0 Param: aty=0 Param: agy=0 Param: afh=1.7 Param: afv=0.6 end simulation info! mcrun PANDA_Michal_DV_draft.instr -d /mnt/d/Aplikacje/McStas/PANDA_Michal_DV_draft_20201213_183238 -n 1000000 prim_shut_pos=1 sapphire=1 ca1=80 ca2=80 ca3=80 ca4=80 ms1=0.04 lms=2.15 lsa=1.05 lad=0.95 ki=1.55 kf=1.55 dE=0 Q=2.5386 mth=0 mtt=0 mtx=0 mty=0 mgy=0 mfh=4.5 mfv=2 scatsense=-1 sth=144.95 stt=0 stx=0 sty=0 stz=0 sgx=0 sgy=0 ss1_width=0.02 ss1_height=0.03 ss2_width=0.02 ss2_height=0.04 ath=0 att=0 atx=0 aty=0 agy=0 afh=1.7 afv=0.6 /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcrun: 14: /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcrun: [[: not found INFO: Using directory: "/mnt/d/Aplikacje/McStas/PANDA_Michal_DV_draft_20201213_183238" INFO: Using existing c-file: ./PANDA_Michal_DV_draft.c INFO: Using existing binary: ./PANDA_Michal_DV_draft.out INFO: === ki: 1.550000 A-1 kf: 1.550000 A-1 dE: 0.000000 meV Lam: 4.053668 A dLam: 0.121610 A mth: 37.170838 deg mtt: 74.341676 deg sth: 144.950000 deg stt: 109.950305 deg ath: 37.170838 deg att: 74.341676 deg [PANDA] Initialize Opening input file '/usr/share/mcstas/2.7/tools/Python/mcrun/../mccodelib/../../../data/Al2O3_sapphire.trm' (Table_Read_Offset) Opening input file '/usr/share/mcstas/2.7/tools/Python/mcrun/../mccodelib/../../../data/HOPG.rfl' (Table_Read_Offset) Opening input file './data/Pb.lau' (Table_Read_Offset) Single_crystal: ./data/Pb.lau structure a=4.95 b=4.95 c=4.95 aa=90 bb=90 cc=90 V0=121.287 Single_crystal: PANDA_cryst: Read 26 reflections from file './data/Pb.lau' Single_crystal: PANDA_cryst: Vc=121.287 [Angs] sigma_abs=0.684 [barn] sigma_inc=0.012 [barn] reflections=./data/Pb.lau Warning: 11722 events were removed in Component[37] PSD_scattered=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Save [PANDA] Detector: PSD_PrimBeam_I=1.25064e+10 PSD_PrimBeam_ERR=6.3648e+07 PSD_PrimBeam_N=45128 "PSD_PrimBeam.psd" Detector: LAM_PrimBeam_I=1.25064e+10 LAM_PrimBeam_ERR=6.3648e+07 LAM_PrimBeam_N=45128 "LAM_PrimBeam.L" Detector: DIV_PrimBeam_I=1.25064e+10 DIV_PrimBeam_ERR=6.3648e+07 DIV_PrimBeam_N=45128 "DIV_PrimBeam.dat" Detector: PSD_mon1_I=6.54851e+08 PSD_mon1_ERR=3.27039e+06 PSD_mon1_N=44493 "PSD_mon1.psd" Detector: LAM_mon1_I=6.54851e+08 LAM_mon1_ERR=3.27039e+06 LAM_mon1_N=44493 "LAM_mon1.L" Detector: PSD_samplepos_I=2.47082e+08 PSD_samplepos_ERR=2.02503e+06 PSD_samplepos_N=15300 "PSD_samplepos.psd" Detector: Mon_samplepos2_I=7.55973e+07 Mon_samplepos2_ERR=1.12146e+06 Mon_samplepos2_N=4709 "Mon_samplepos2" Detector: PSD_scattered_I=919849 PSD_scattered_ERR=26590.5 PSD_scattered_N=3255 "scattered.psd" Detector: PSD_mon2_I=883326 PSD_mon2_ERR=26187 PSD_mon2_N=3021 "PSD_mon2.psd" Detector: PSD_det_I=146992 PSD_det_ERR=2386.86 PSD_det_N=10319 "PSD_det.psd" Detector: PSD_det1_I=146519 PSD_det1_ERR=2382.36 PSD_det1_N=10252 "PSD_det1.psd" Detector: PSD_det2_I=146992 PSD_det2_ERR=2386.86 PSD_det2_N=10319 "PSD_det2.psd" Finally [PANDA: /mnt/d/Aplikacje/McStas/PANDA_Michal_DV_draft_20201213_183238]. Time: 1 [s] INFO: Placing instr file copy PANDA_Michal_DV_draft.instr in dataset /mnt/d/Aplikacje/McStas/PANDA_Michal_DV_draft_20201213_183238 mcplot-pyqtgraph /mnt/d/Aplikacje/McStas/PANDA_Michal_DV_draft_20201213_183238 /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcplot-pyqtgraph: 14: /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcplot-pyqtgraph: [[: not found q - quit p - save png s - save svg l - log toggle t - textinfo toggle c - cycle colormap F1/h - help F5 - replot click - display subplot right-click/b - back ctrl + click - sweep monitors x - expand subplots Active colormap: jet /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcrun: 14: /usr/share/mcstas/2.7/tools/Python/mcgui/../mccodelib/../../../bin/mcrun: [[: not found INFO: No output directory specified (--dir) INFO: Using directory: "PANDA_Michal_DV_draft_20201213_183258" INFO: Regenerating c-file: PANDA_Michal_DV_draft.c Info: 'Al_window' is a contributed component. Info: Defining SPLIT from PG002_mono=Monochromator_curved() to END in instrument PANDA Info: Defining SPLIT from PG002_ana=Monochromator_curved() to END in instrument PANDA CFLAGS= -Wl,-rpath,NCrystalLink/lib -LNCrystalLink/lib -lNCrystal -INCrystalLink/include INFO: Recompiling: ./PANDA_Michal_DV_draft.out mccode-r.c: In function ‘sighandler’: mccode-r.c:3719:5: warning: implicit declaration of function ‘kill’; did you mean ‘ceill’? [-Wimplicit-function-declaration] mccode-r.c: In function ‘mcdetector_import’: mccode-r.c:768:51: warning: ‘ ’ directive output may be truncated writing 1 byte into a region of size between 0 and 1023 [-Wformat-truncation=] In file included from /usr/include/stdio.h:862:0, from mccode-r.h:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output 9 or more bytes (assuming 1032) into a destination of size 1024 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NCrystalLink/lib/libNCrystal.so: undefined reference to `log2@GLIBC_2.29' NCrystalLink/lib/libNCrystal.so: undefined reference to `log@GLIBC_2.29' NCrystalLink/lib/libNCrystal.so: undefined reference to `std::__cxx11::basic_ostringstream, std::allocator >::basic_ostringstream()@GLIBCXX_3.4.26' NCrystalLink/lib/libNCrystal.so: undefined reference to `exp@GLIBC_2.29' NCrystalLink/lib/libNCrystal.so: undefined reference to `pow@GLIBC_2.29' collect2: error: ld returned 1 exit status